Recent Publications

2026

Predicting the absence of World Health Organization fungal priority pathogens in agricultural soils using machine learning and ITS metabarcoding
Syahriar Nur Maulana Malik Ibrahim, Chayawan Jaikla, Nuttapon Pombubpa
The Science of Nature  ·  21 Jul 2026
WHO fungal priority pathogens list (FPPL)Next-generation sequencing (NGS)MetabarcodingMachine learningDecision tree modelsEnvironmental thresholds
Opportunistic fungi in tropical beaches: Diversity, WHO fungal priority pathogens, and antifungal resistance case study
Syahriar Nur Maulana Malik Ibrahim, Chayaporn Lakmuang, Teeratat Kaewjon, Panwad Tongchai, Gregorius Nico Adi Setiawan, Phetcharin Hinmo, Ariya Chindamporn, Nattapol Kraisitudomsook, Nuttapon Pombubpa
Scientific Reports  ·  04 Jun 2026
WHO FPPLOpportunistic pathogensDiversityAntifungal resistanceFungal community structureBeach reservoirs

2025

Bio-hydrogel formulation for co-immobilization of microalgae and bacteria in living biofilters for nutrient recovery from secondary industrial effluents
Chalampol Janpum, Jagroop Pandhal, Nuttapon Pombubpa, Tanakit Komkhum, Chonnikarn Sirichan, Piyakorn Srichuen, Pichaya In-na
Cleaner Engineering and Technology  ·  01 Dec 2025
Wastewater treatmentNutrient recoveryHydrogel formulationBiofiltersCo-immobilization
Optimizing fungal DNA extraction and purification for Oxford Nanopore untargeted shotgun metagenomic sequencing from simulated hemoculture specimens
Nattapong Langsiri, Wieland Meyer, Laszlo Irinyi, Navaporn Worasilchai, Nuttapon Pombubpa, Thidathip Wongsurawat, Piroon Jenjaroenpun, J. Jennifer Luangsa-ard, Ariya Chindamporn
mSystems  ·  17 Jun 2025
DNA preparationlong readsimulated hemocultureOxford Nanopore Technology
Population Persistence and Soil Microbial Communities of a Serpentine Endemic Plant Outside Its Historic Elevation Range
Courtney Collins, Devin Dinwiddie, Nuttapon Pombubpa, Krista McGuire, Marko J. Spasojevic
Ecology and Evolution  ·  01 Jun 2025
Arbuscular mycorrhizal fungiclimate changeendemicmicrohabitatplant–microbe interactions
Exploring Fungal Abundance and WHO Fungal Priority Pathogens in Agricultural Fields: A One Health Perspective in Northeast Thailand
Chayaporn Lakmuang, Syahriar Nur Maulana Malik Ibrahim, Teeratat Kaewjon, Nattapol Kraisitudomsook, Naraporn Somboonna, Ratmanee Chanabun, Ariya Chindamporn, Nuttapon Pombubpa
Life  ·  18 Mar 2025
fungal pathogenWHO FPPLagricultureone healthmetabarcoding
Fungal Isolation and Cell DNA (c-DNA) Extraction from Soil Samples v1
Nuttapon Pombubpa, Ariya Chindamporn, Nattapol Kraisitudomsook, Neil Andrew Robert Gow, Syahriar Nur Maulana Malik Ibrahim, Fikran Aranda Fahrudin
Springer Science and Business Media LLC  ·  30 Jan 2025
fungal cDNA extraction
Soil Collection Protocol v1
Nuttapon Pombubpa, Ariya Chindamporn, Nattapol Kraisitudomsook, Neil Andrew Robert Gow, Syahriar Nur Maulana Malik Ibrahim, Fikran Aranda Fahrudin
Springer Science and Business Media LLC  ·  22 Jan 2025
Microbial soil sampling
Environmental DNA (e-DNA) extraction from soil v1
Nuttapon Pombubpa, Ariya Chindamporn, Nattapol Kraisitudomsook, Neil Andrew Robert Gow, Syahriar Nur Maulana Malik Ibrahim, Fikran Aranda Fahrudin
Springer Science and Business Media LLC  ·  22 Jan 2025
soil eDNA extraction

2024

Plant community richness and foliar fungicides impact soil Streptomyces inhibition, resistance, and resource use phenotypes
Matthew Michalska-Smith, Daniel C. Schlatter, Nuttapon Pombubpa, Sarah C. Castle, A. Stuart Grandy, Elizabeth T. Borer, Eric W. Seabloom, Linda L. Kinkel
Frontiers in Microbiology  ·  07 Oct 2024
soil nutrientsmicrobe-microbe interactionsphenotypesco-evolutionphylogeny
A large scale study of portable sweat test sensor for accurate, non-invasive and rapid COVID-19 screening based on volatile compound marker detection
Isaya Thaveesangsakulthai, Kaywalee Chatdarong, Naraporn Somboonna, Nuttapon Pombubpa, Tanapat Palaga, Sureerat Makmuang, Kanet Wongravee, Voravee Hoven, Pakpum Somboon, Pattama Torvorapanit, Thumnoon Nhujak, Chadin Kulsing
Scientific Reports  ·  30 Aug 2024
COVID-19 screeningDisease diagnosisModified PIDSweat sensorVOCs
Microalgal-bacterial immobilized co-culture as living biofilters for nutrient recovery from synthetic wastewater and their potential as biofertilizers
Augustine Odibo, Chalampol Janpum, Nuttapon Pombubpa, Tanakarn Monshupanee, Aran Incharoensakdi, Zia Ur Rehman, Pichaya In-na
Bioresource Technology  ·  01 Apr 2024
Circular bioeconomySoil amendmentSustainable agricultureBiomassBiocomposites
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert
Thuy M. Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T. B. K. Reddy, Chris Daum, Alex Copeland, I-Min A. Chen, Natalia N. Ivanova, Nikos C. Kyrpides, Miranda Harmon-Smith, Emiley A. Eloe-Fadrosh, Nicole Pietrasiak, Jason E. Stajich, Erik F. Y. Hom
Microbiology Resource Announcements  ·  12 Mar 2024
MetagenomesBiocrustDesert microbes
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting
Thuy M. Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T. B. K. Reddy, Chris Daum, Alex Copeland, I-Min A. Chen, Natalia N. Ivanova, Nikos C. Kyrpides, Miranda Harmon-Smith, Emiley A. Eloe-Fadrosh, Nicole Pietrasiak, Jason E. Stajich, Erik F. Y. Hom
Microbiology Resource Announcements  ·  15 Feb 2024
MetatranscriptomesBiocrustDesert microbes

2023

Streptomyces Diversity Maps Reveal Distinct High-Specificity Biogeographical and Environmental Patterns Compared to the Overall Bacterial Diversity
Nuttapon Pombubpa, Chayaporn Lakmuang, Pornnapat Tiwong, Chompoonik Kanchanabanca
Life  ·  20 Dec 2023
StreptomycesMicrobial biogeographyBiodiversity
Landscape characteristics shape surface soil microbiomes in the Chihuahuan Desert
Frederick A. Hansen, Darren K. James, John P. Anderson, Christy S. Meredith, Andrew J. Dominguez, Nuttapon Pombubpa, Jason E. Stajich, Adriana L. Romero-Olivares, Shawn W. Salley, Nicole Pietrasiak
Frontiers in Microbiology  ·  07 Jun 2023
Chihuahuan DesertSurface soil microbiomesAmplicon sequencing
Legacy effects post removal of a range-expanding shrub influence soil fungal communities and create negative plant-soil feedbacks for conspecific seedlings
Courtney G. Collins, Marko J. Spasojevic, Nuttapon Pombubpa, Jeffrey M. Diez
Plant and Soil  ·  03 Feb 2023
Legacy effectsSoil fungal communitiesPlant-soil feedbacks

2022

Advancement on mixed microalgal-bacterial cultivation systems for nitrogen and phosphorus recoveries from wastewater to promote sustainable bioeconomy
Chalampol Janpum, Nuttapon Pombubpa, Tanakarn Monshupanee, Aran Incharoensakdi, Pichaya In-na
Journal of Biotechnology  ·  01 Dec 2022
Mixed Microalgal and Bacterial (MMB)nitrogen and phosphorus recoveries
Landscape Topography and Regional Drought Alters Dust Microbiomes in the Sierra Nevada of California
Mia R. Maltz, Chelsea J. Carey, Hannah L. Freund, Jon K. Botthoff, Stephen C. Hart, Jason E. Stajich, Sarah M. Aarons, Sarah M. Aciego, Molly Blakowski, Nicholas C. Dove, Morgan E. Barnes, Nuttapon Pombubpa, Emma L. Aronson
Frontiers in Microbiology  ·  28 Jun 2022
Dust MicrobiomeAmplicon sequencingFungiSierra Nevada

2021

Amplicon Sequencing of Rock-Inhabiting Microbial Communities from Joshua Tree National Park, USA
Claudia Coleine, Laura Selbmann, Nuttapon Pombubpa, Jason E. Stajich
Microbiology Resource Announcements  ·  24 Jun 2021
Rock-Inhabiting MicrobesAmplicon sequencingFungiJoshua Tree National Park

2020

Belowground impacts of alpine woody encroachment are determined by plant traits, local climate, and soil conditions
Courtney G. Collins, Marko J. Spasojevic, Concepción L. Alados, Emma L. Aronson, Juan C. Benavides, Nicoletta Cannone, Chatrina Caviezel, Oriol Grau, Hui Guo, Gaku Kudo, Nikolas J. Kuhn, Jana Müllerová, Michala L. Phillips, Nuttapon Pombubpa, Frédérique Reverchon, Hannah B. Shulman, Jason E. Stajich, Alexia Stokes, Sören E. Weber, Jeffrey M. Diez
Global Change Biology  ·  08 Oct 2020
Alpine woody encroachmentPlant traitsAmplicon sequencingFungi
Uncovered Microbial Diversity in Antarctic Cryptoendolithic Communities Sampling Three Representative Locations of the Victoria Land
Claudia Coleine, Nuttapon Pombubpa, Laura Zucconi, Silvano Onofri, Benedetta Turchetti, Pietro Buzzini, Jason E. Stajich, Laura Selbmann
Microorganisms  ·  23 Jun 2020
AntarcticaEndolithic communitiesFungiAmplicon sequencing
Insights into dryland biocrust microbiome: geography, soil depth and crust type affect biocrust microbial communities and networks in Mojave Desert, USA
Nuttapon Pombubpa, Nicole Pietrasiak, Paul De Ley, Jason E Stajich
FEMS Microbiology Ecology  ·  23 Jun 2020
BiocrustFungi-bacteria networksDesert microbesAmplicon sequencingFungi
Sampling strategies to assess microbial diversity of Antarctic cryptoendolithic communities
Claudia Coleine, Jason E. Stajich, Nuttapon Pombubpa, Laura Zucconi, Silvano Onofri, Laura Selbmann
Polar Biology  ·  17 Feb 2020
AntarcticaEndolithic communitiesAmplicon sequencing
Endolithic Fungal Species Markers for Harshest Conditions in the McMurdo Dry Valleys, Antarctica
Claudia Coleine, Nuttapon Pombubpa, Laura Zucconi, Silvano Onofri, Jason E. Stajich, Laura Selbmann
Life  ·  06 Feb 2020
AntarcticaEndolithic communitiesAmplicon sequencingMcMurdo Dry ValleysFungi

2019

Reproduction and Dispersal of Biological Soil Crust Organisms
Steven D. Warren, Larry L. Clair, Lloyd R. Stark, Louise A. Lewis, Nuttapon Pombubpa, Tania Kurbessoian, Jason E. Stajich, Zachary T. Aanderud
Frontiers in Ecology and Evolution  ·  04 Oct 2019
BiocrustFungiBacteriaDispersalReproduction
Altitude and fungal diversity influence the structure of Antarctic cryptoendolithic Bacteria communities
Claudia Coleine, Jason E. Stajich, Nuttapon Pombubpa, Laura Zucconi, Silvano Onofri, Fabiana Canini, Laura Selbmann
Environmental Microbiology Reports  ·  26 Aug 2019
AntarcticaEndolithic communitiesAmplicon sequencingMcMurdo Dry ValleysBacteria

2018

Antarctic Cryptoendolithic Fungal Communities Are Highly Adapted and Dominated by Lecanoromycetes and Dothideomycetes
Claudia Coleine, Jason E. Stajich, Laura Zucconi, Silvano Onofri, Nuttapon Pombubpa, Eleonora Egidi, Ashley Franks, Pietro Buzzini, Laura Selbmann
Frontiers in Microbiology  ·  29 Jun 2018
AntarcticaEndolithic communitiesAmplicon sequencingExtremophilesFungi
Sun Exposure Shapes Functional Grouping of Fungi in Cryptoendolithic Antarctic Communities
Claudia Coleine, Laura Zucconi, Silvano Onofri, Nuttapon Pombubpa, Jason Stajich, Laura Selbmann
Life  ·  02 Jun 2018
AntarcticaEndolithic communitiesAmplicon sequencingFUNGuildFungi
Shrub range expansion alters diversity and distribution of soil fungal communities across an alpine elevation gradient
Courtney G. Collins, Jason E. Stajich, Sören E. Weber, Nuttapon Pombubpa, Jeffrey M. Diez
Molecular Ecology  ·  01 May 2018
Shrub range expansionSoil fungal communitiesAmplicon sequencingFungi

2016

Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden)
Kessy Abarenkov, Rachel I. Adams, Irinyi Laszlo, Ahto Agan, Elia Ambrosio, Alexandre Antonelli, Mohammad Bahram, Johan Bengtsson-Palme, Gunilla Bok, Patrik Cangren, Victor Coimbra, Claudia Coleine, Claes Gustafsson, Jinhong He, Tobias Hofmann, Erik Kristiansson, Ellen Larsson, Tomas Larsson, Yingkui Liu, Svante Martinsson, Wieland Meyer, Marina Panova, Nuttapon Pombubpa, Camila Ritter, Martin Ryberg, Sten Svantesson, Ruud Scharn, Ola Svensson, Mats Töpel, Martin Unterseher, Cobus Visagie, Christian Wurzbacher, Andy F.S. Taylor, Urmas Kõljalg, Lynn Schriml, R. Henrik Nilsson
MycoKeys  ·  26 Sep 2016
Built environmentIndoor fungiITSAnnotationMycobiome

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The citations on this page were generated automatically from just identifiers using the Manubot cite utility developed by the Greene Lab.