Nat Pombubpa Lab - Publications

Microalgal-bacterial immobilized co-culture as living biofilters for nutrient recovery from synthetic wastewater and their potential as biofertilizers

Augustine Odibo, Chalampol Janpum, Nuttapon Pombubpa, Tanakarn Monshupanee, Aran Incharoensakdi, Zia Ur Rehman, Pichaya In-na

Bioresource Technology · 01 Apr 2024

Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert

Thuy M. Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T. B. K. Reddy, Chris Daum, Alex Copeland, I-Min A. Chen, Natalia N. Ivanova, Nikos C. Kyrpides, Miranda Harmon-Smith, Emiley A. Eloe-Fadrosh, Nicole Pietrasiak, Jason E. Stajich, Erik F. Y. Hom

Microbiology Resource Announcements · 12 Mar 2024

Metagenomes Biocrust Desert microbes

Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting

Thuy M. Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T. B. K. Reddy, Chris Daum, Alex Copeland, I-Min A. Chen, Natalia N. Ivanova, Nikos C. Kyrpides, Miranda Harmon-Smith, Emiley A. Eloe-Fadrosh, Nicole Pietrasiak, Jason E. Stajich, Erik F. Y. Hom

Microbiology Resource Announcements · 15 Feb 2024

Metatranscriptomes Biocrust Desert microbes

Streptomyces Diversity Maps Reveal Distinct High-Specificity Biogeographical and Environmental Patterns Compared to the Overall Bacterial Diversity

Nuttapon Pombubpa, Chayaporn Lakmuang, Pornnapat Tiwong, Chompoonik Kanchanabanca

Life · 20 Dec 2023

Streptomyces Microbial biogeography Biodiversity

Landscape characteristics shape surface soil microbiomes in the Chihuahuan Desert

Frederick A. Hansen, Darren K. James, John P. Anderson, Christy S. Meredith, Andrew J. Dominguez, Nuttapon Pombubpa, Jason E. Stajich, Adriana L. Romero-Olivares, Shawn W. Salley, Nicole Pietrasiak

Frontiers in Microbiology · 07 Jun 2023

Chihuahuan Desert Surface soil microbiomes Amplicon sequencing

Legacy effects post removal of a range-expanding shrub influence soil fungal communities and create negative plant-soil feedbacks for conspecific seedlings

Courtney G. Collins, Marko J. Spasojevic, Nuttapon Pombubpa, Jeffrey M. Diez

Plant and Soil · 03 Feb 2023

Legacy effects Soil fungal communities Plant-soil feedbacks

Advancement on mixed microalgal-bacterial cultivation systems for nitrogen and phosphorus recoveries from wastewater to promote sustainable bioeconomy

Chalampol Janpum, Nuttapon Pombubpa, Tanakarn Monshupanee, Aran Incharoensakdi, Pichaya In-na

Journal of Biotechnology · 01 Dec 2022

Mixed Microalgal and Bacterial (MMB)nitrogen and phosphorus recoveries

Landscape Topography and Regional Drought Alters Dust Microbiomes in the Sierra Nevada of California

Mia R. Maltz, Chelsea J. Carey, Hannah L. Freund, Jon K. Botthoff, Stephen C. Hart, Jason E. Stajich, Sarah M. Aarons, Sarah M. Aciego, Molly Blakowski, Nicholas C. Dove, Morgan E. Barnes, Nuttapon Pombubpa, Emma L. Aronson

Frontiers in Microbiology · 28 Jun 2022

Dust Microbiome Amplicon sequencing Fungi Sierra Nevada

Amplicon Sequencing of Rock-Inhabiting Microbial Communities from Joshua Tree National Park, USA

Claudia Coleine, Laura Selbmann, Nuttapon Pombubpa, Jason E. Stajich

Microbiology Resource Announcements · 24 Jun 2021

Rock-Inhabiting Microbes Amplicon sequencing Fungi Joshua Tree National Park

Belowground impacts of alpine woody encroachment are determined by plant traits, local climate, and soil conditions

Courtney G. Collins, Marko J. Spasojevic, Concepción L. Alados, Emma L. Aronson, Juan C. Benavides, Nicoletta Cannone, Chatrina Caviezel, Oriol Grau, Hui Guo, Gaku Kudo, Nikolas J. Kuhn, Jana Müllerová, Michala L. Phillips, Nuttapon Pombubpa, Frédérique Reverchon, Hannah B. Shulman, Jason E. Stajich, Alexia Stokes, Sören E. Weber, Jeffrey M. Diez

Global Change Biology · 08 Oct 2020

Alpine woody encroachment Plant traits Amplicon sequencing Fungi

Uncovered Microbial Diversity in Antarctic Cryptoendolithic Communities Sampling Three Representative Locations of the Victoria Land

Claudia Coleine, Nuttapon Pombubpa, Laura Zucconi, Silvano Onofri, Benedetta Turchetti, Pietro Buzzini, Jason E. Stajich, Laura Selbmann

Microorganisms · 23 Jun 2020

Antarctica Endolithic communities Fungi Amplicon sequencing

Insights into dryland biocrust microbiome: geography, soil depth and crust type affect biocrust microbial communities and networks in Mojave Desert, USA

Nuttapon Pombubpa, Nicole Pietrasiak, Paul De Ley, Jason E Stajich

FEMS Microbiology Ecology · 23 Jun 2020

Biocrust Fungi-bacteria networks Desert microbes Amplicon sequencing Fungi

Sampling strategies to assess microbial diversity of Antarctic cryptoendolithic communities

Claudia Coleine, Jason E. Stajich, Nuttapon Pombubpa, Laura Zucconi, Silvano Onofri, Laura Selbmann

Polar Biology · 17 Feb 2020

Antarctica Endolithic communities Amplicon sequencing

Endolithic Fungal Species Markers for Harshest Conditions in the McMurdo Dry Valleys, Antarctica

Claudia Coleine, Nuttapon Pombubpa, Laura Zucconi, Silvano Onofri, Jason E. Stajich, Laura Selbmann

Life · 06 Feb 2020

Antarctica Endolithic communities Amplicon sequencing McMurdo Dry Valleys Fungi

Reproduction and Dispersal of Biological Soil Crust Organisms

Steven D. Warren, Larry L. Clair, Lloyd R. Stark, Louise A. Lewis, Nuttapon Pombubpa, Tania Kurbessoian, Jason E. Stajich, Zachary T. Aanderud

Frontiers in Ecology and Evolution · 04 Oct 2019

Biocrust Fungi Bacteria Dispersal Reproduction

Altitude and fungal diversity influence the structure of Antarctic cryptoendolithic Bacteria communities

Claudia Coleine, Jason E. Stajich, Nuttapon Pombubpa, Laura Zucconi, Silvano Onofri, Fabiana Canini, Laura Selbmann

Environmental Microbiology Reports · 26 Aug 2019

Antarctica Endolithic communities Amplicon sequencing McMurdo Dry Valleys Bacteria

Antarctic Cryptoendolithic Fungal Communities Are Highly Adapted and Dominated by Lecanoromycetes and Dothideomycetes

Claudia Coleine, Jason E. Stajich, Laura Zucconi, Silvano Onofri, Nuttapon Pombubpa, Eleonora Egidi, Ashley Franks, Pietro Buzzini, Laura Selbmann

Frontiers in Microbiology · 29 Jun 2018

Antarctica Endolithic communities Amplicon sequencing Extremophiles Fungi

Sun Exposure Shapes Functional Grouping of Fungi in Cryptoendolithic Antarctic Communities

Claudia Coleine, Laura Zucconi, Silvano Onofri, Nuttapon Pombubpa, Jason Stajich, Laura Selbmann

Life · 02 Jun 2018

Antarctica Endolithic communities Amplicon sequencing FUNGuild Fungi

Shrub range expansion alters diversity and distribution of soil fungal communities across an alpine elevation gradient

Courtney G. Collins, Jason E. Stajich, Sören E. Weber, Nuttapon Pombubpa, Jeffrey M. Diez

Molecular Ecology · 01 May 2018

Shrub range expansion Soil fungal communities Amplicon sequencing Fungi

Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden)

Kessy Abarenkov, Rachel I. Adams, Irinyi Laszlo, Ahto Agan, Elia Ambrosio, Alexandre Antonelli, Mohammad Bahram, Johan Bengtsson-Palme, Gunilla Bok, Patrik Cangren, Victor Coimbra, Claudia Coleine, Claes Gustafsson, Jinhong He, Tobias Hofmann, Erik Kristiansson, Ellen Larsson, Tomas Larsson, Yingkui Liu, Svante Martinsson, Wieland Meyer, Marina Panova, Nuttapon Pombubpa, Camila Ritter, Martin Ryberg, Sten Svantesson, Ruud Scharn, Ola Svensson, Mats Töpel, Martin Unterseher, Cobus Visagie, Christian Wurzbacher, Andy F.S. Taylor, Urmas Kõljalg, Lynn Schriml, R. Henrik Nilsson

MycoKeys · 26 Sep 2016

Built environment Indoor fungi ITS Annotation Mycobiome

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